Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSDVVEKQTAKSFIMNVLNGLALGTVIVLIPGAILGELMKALLPMWSGFATLIAATAVATSMMGLVIGIMVGLNFKFNPIQSASLGLAVMFAGGAATFLKGAIMLKGTGDIINMGITAALGVLLIQFLSDKTKSFTLIVIPTVTLLLVGGVGHVLLPYVKMITTMIGQGIASLLGLQPVLMSILIAMIFCFLIVSPITTVGIALAISLSGIGSGAANLGICAASFGLCMAGWSVNSKGTALAHVLGSPKISMANVLAKPKIMLPMISSAAILGILGALFNIQGTPASAGFGISGLIGPINALNLAKGGWSVMNMLLIIIIFVAAPIILNFIFNYLFIKVLKIIDPMDYKLDI |
2Q3R Chain:A ((230-345)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DRVGIRLSPFADYMESGDTNPG----ALGLYMAE-SLNKYGILYCHVIEARM----------HTLMPMRKAFKGTFISAGGFTREDGNEAVSKGRTDLV--------AYGRWFLANPDLPKRFQVDAPLNKYDRPTFYTSDPVVGYTDYPFLE-- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2Q3R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -80439 for 720 contacts (-111.7/contact) +
2D Compatibility (PS) -10576 + (NN) 635 + (LL) 19528
1D Compatibility (HY) -2400 + (ID) 1550
Total energy: -74802.0 ( -103.89 by residue)
QMean score : 0.051
|
|
|