Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVQSYSKNANHNMRRPVVKEEIVQYMRQHQKQNNGCLAELEAFAKQENIPIIPHETATYFRFLMQTLQPKHILEIGTAIGFSALLMAENA--PEAKITTIDRNEEMIVLAKENFAKYDNHNQITLLEGDAVDVLQTLDKSYDFVFMDSAKSKYIVFLPQVLKH--LDVGGVVVLDDIFQ-----GGDIAKPI-DEVRRGQRTIYRGLQRLFDSTLRHPDLTATLVPLGDGLLMIRKNAEHIVLED
4QVK Chain:A ((56-234))
--------------------------------------------------------GSWMIFTARDRKPKRILEIGCYSGYSALAWYEGTRDTKAEIVTLEYSPKMIAASREAFKKYGVGDRVKLIEGPAENTLKTLEGEFDLIFVDANKDGYAGYVKTILDQGLLSANGIILCDNVFARGLTIGPDCAPWLNDHVRPYWNGCGQALDKFSAGLMEDPRIDVLLLPVFDGVTQIRWKDG------
General information:
TITO was launched using:
RESULT:
Template:
4QVK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125398 for 1307 contacts (-95.9/contact) +
2D Compatibility (PS) -18506 + (NN) -10640 + (LL) 4944
1D Compatibility (HY) -13600 + (ID) 2650
Total energy: -165850.0 ( -126.89 by residue)
QMean score : 0.609
(partial model without unconserved sides chains):
PDB file :
Tito_4QVK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QVK-query.scw
PDB file :
Tito_Scwrl_4QVK.pdb
: