Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLYKKRRFFMSKNNNTTCLIETAIFAALAMALSMIPDFA-SWFTPSFGAIPLILFALRRGTKYGLFAGLIWGLLHFVLSKVYYLSLSQVFIEYILAFISMGLAGVFSAKFKDALSSSSKTKALSLA--LSGAILATFVRYVWHYIAGVIFWASYAPKGMSATLYSLSVNGTAGLLTLFFVVISIIILVISYPSFFLPKK
4MES Chain:A ((7-178))
--------------NVRLLTEIAFMAALAFIISLIPNTVYGWIIVEIACIPILLLSLRRGLTAGLVGGLIWGILSMITGHAYILSLSQAFLEYLVAPVSLGIAGLF----------RQKTAPLKLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISGILTAIAAFVILIIFVKKFPKLFIHSN
General information:
TITO was launched using:
RESULT:
Template:
4MES.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -194203 for 1353 contacts (-143.5/contact) +
2D Compatibility (PS) -17282 + (NN) -4851 + (LL) 1716
1D Compatibility (HY) -25600 + (ID) 3850
Total energy: -244070.0 ( -180.39 by residue)
QMean score : 0.285
(partial model without unconserved sides chains):
PDB file :
Tito_4MES.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MES-query.scw
PDB file :
Tito_Scwrl_4MES.pdb
: