Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATITVFSKNNCMQCKMTKKFLDQHGADFEEINIDEKPEKIEYVKNLGFSAAPVIEAGNVVFSGFQPSKLKELV
4K8M Chain:A ((1-71))
--TVTVYTKPACVQCSATSKALDKQGIAYQKVDISLDSEARDYVMALGYLQAPVVVAGNDHWSGFRPDRIKALA
General information:
TITO was launched using:
RESULT:
Template:
4K8M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35771 for 491 contacts (-72.9/contact) +
2D Compatibility (PS) -7726 + (NN) -3746 + (LL) 352
1D Compatibility (HY) -6000 + (ID) 1500
Total energy: -54391.0 ( -110.78 by residue)
QMean score : 0.892
(partial model without unconserved sides chains):
PDB file :
Tito_4K8M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K8M-query.scw
PDB file :
Tito_Scwrl_4K8M.pdb
: