Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQITFKKVGLDNVNILQNLAIETFRQTFSHDNSEEQLQAFFNESYTLPVLKSEITHAESDTYFVYLDTDLVGYLKVNWGSQQTEKDLDKAFEIQRIYLLDAYQGKGIGKATFEFALDLAYKSGLDWAWLGVWEFNHKAQAFYAKYGFEKFSEHQFSVGDKVDTDWLLRKSLH
1TIQ Chain:A ((3-171))
---VKMKKCSREDLQTLQQLSIETFNDTFKEQNSPENMKAYLESAFNTEQLEKELSNMSSQFFFIYFDHEIAGYVKVNIDDAQSEEMGAESLEIERIYIKNSFQKHGLGKHLLNKAIEIALERNKKNIWLGVWEKNENAIAFYKKMGFVQTGAHSFYMGDEEQTDLIMAKTLI
General information:
TITO was launched using:
RESULT:
Template:
1TIQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81765 for 1241 contacts (-65.9/contact) +
2D Compatibility (PS) -18345 + (NN) -6687 + (LL) 300
1D Compatibility (HY) -14800 + (ID) 3050
Total energy: -124347.0 ( -100.20 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_1TIQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TIQ-query.scw
PDB file :
Tito_Scwrl_1TIQ.pdb
: