Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEKEKMLAGQYYRPSAPELRKDREVALKNMQAFNN--EDNSSKRNVILQKWFGATGKSIHMEQRFVCDYGCNIYVGENFYANFNQTFLDVCEIRIGDNCMFGPNCQLLTPLHPLDPIERNSGLEYGAPIQIGNNVWLGGGVTILPGVVLGDNVVVGAGSVVTKSFENNVVIAGNPAKIIKKLA
2P2O Chain:A ((3-184))
-SEKEKMLAGHLYNPADLELVKERERARRLVRLYNETLETEYDKRTGLLKELFGSTGERLFIEPNFRCDYGYNIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINPGVTIGDNAVIASGAVVTKDVPANAVVGGNPAKVIKWLK
General information:
TITO was launched using:
RESULT:
Template:
2P2O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137389 for 1411 contacts (-97.4/contact) +
2D Compatibility (PS) -20037 + (NN) -10075 + (LL) 208
1D Compatibility (HY) -17200 + (ID) 4900
Total energy: -189393.0 ( -134.23 by residue)
QMean score : 0.626
(partial model without unconserved sides chains):
PDB file :
Tito_2P2O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2P2O-query.scw
PDB file :
Tito_Scwrl_2P2O.pdb
: