Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEKCPIIALDFSDLASVTTFLEHFPKEELLFVKIGMELYYSEGPSIIRYIKSLGHRIFLDLKLHDIPNTVRSSMSVLAKLGIDMTNVHAAGGVEMMKAAREGLGEG-------PILLAVTQLTSTSQEQMQVDQHINLSVVDSVCHYAQKAQEAGLDGVVASAQEVKQIKKQTNEHFICLTPGIRPPQTNQLDDQKRTMTPEQARIVGADYIVVGRPITKAENPYQAYLEIKEEWNRIK
2YYT Chain:A ((8-236))
------IVALDFPSKQEVERFLRPFAGTPL-FVKVGMELYYQEGPAIVAFLKEQGHAVFLDLKLHDIPNTVKQAMKGLARVGADLVNVHAAGGRRMMEAAIEGLDAGTPSGRMRPRCIAVTQLTSTDERMLHEELWISRPLVETVAHYAALAKESGLDGVVCSANEAAFIKERCGASFLAVT-----------------VTPRKARALGSDYIVIGRSLTRAADPLRTYARLQHEWN---
General information:
TITO was launched using:
RESULT:
Template:
2YYT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140009 for 1682 contacts (-83.2/contact) +
2D Compatibility (PS) -21919 + (NN) -4768 + (LL) 1296
1D Compatibility (HY) -20000 + (ID) 5350
Total energy: -190750.0 ( -113.41 by residue)
QMean score : 0.605
(partial model without unconserved sides chains):
PDB file :
Tito_2YYT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YYT-query.scw
PDB file :
Tito_Scwrl_2YYT.pdb
: