Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKKDKKIEIQISDAQVTVNGTKVDGYQLVIGKKIVGQIAELDSKFAVIKGEQVSGFYKNLDQAMGNIIEEYNLNR
2PLW Chain:A ((103-126))
---QDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGMFQLVH
General information:
TITO was launched using:
RESULT:
Template:
2PLW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1128 for 68 contacts (16.6/contact) +
2D Compatibility (PS) -2553 + (NN) -1194 + (LL) 244
1D Compatibility (HY) -2000 + (ID) 600
Total energy: -4975.0 ( -73.16 by residue)
QMean score : 0.370
(partial model without unconserved sides chains):
PDB file :
Tito_2PLW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PLW-query.scw
PDB file :
Tito_Scwrl_2PLW.pdb
: