Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKVRIYHNPNCGTSRNVLAIIRHCGIEPEIIYYLKTPPSRMELVELLLEMKLSARELLRTDVPAYEKFNLESSSVTDEEMIDAMIQDPILINRPIVVTSKGAKLCRPCEEILTILPVKMEKDFVKEDGQIIQSL
1SD8 Chain:A ((3-130))
--NITIYHNPACGTSRNTLEMIRNSGTEPTIILYLENPPSRDELVKLIADMGISVRALLKKNVEPYEQLGLAEDKFTDDQLIDFMLQHPILINRPIVVTPLGTRLCRPSEVVLDILQDAQKGAFTKEDGEKVVDE
General information:
TITO was launched using:
RESULT:
Template:
1SD8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108462 for 952 contacts (-113.9/contact) +
2D Compatibility (PS) -13379 + (NN) -1203 + (LL) 312
1D Compatibility (HY) -13200 + (ID) 3450
Total energy: -139382.0 ( -146.41 by residue)
QMean score : 0.716
(partial model without unconserved sides chains):
PDB file :
Tito_1SD8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SD8-query.scw
PDB file :
Tito_Scwrl_1SD8.pdb
: