Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIDYIDLALTYGGFTSLDKVYLEKKLDGLSKQQRLDFITPPPSVINAYFAEIYQKQGPEAATDYYFDL--SKALGLFPKH-LSFDEEKPFIRLNLSGKSFGFAYLNDQEEASVFSEVKEVITPQLLLEIAQIFPQYKVYQDRSGIRMAKIDFDETESQNITPETSLLGNVLQLKKDIIKITSFNQEELLELVKTKSGKYYYSSQGRESVIYIDTKSTN |
4CID Chain:A ((96-165)) | --------------------------------------------------------GPEPTTDCFVAVMHGETEGTVPGNA-----------LNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGALMWALGKVVGTPEVLRVYIG |
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General information:
TITO was launched using:
| RESULT:
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Template: 4CID.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 3865 for 261 contacts (14.8/contact) +
2D Compatibility (PS) -5680 + (NN) 2931 + (LL) 4688
1D Compatibility (HY) -4000 + (ID) 800
Total energy: 1004.0 ( 3.85 by residue)
QMean score : 0.036
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