Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRSFFQKTFNLNLNLLFFGFIAFLISYGFHVLGNQIKTSSFLSSQSVFADIQTKLQVVDQYTQSIAYLFILIAIILTLTELCQRIMKDSIWNYFKSVYQTL
3G9R Chain:A ((6-13))
----------------------------------------------------------------------------------------ASLWNWFNITNWLW
General information:
TITO was launched using:
RESULT:
Template:
3G9R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -523 for 22 contacts (-23.8/contact) +
2D Compatibility (PS) -804 + (NN) 77 + (LL) 8600
1D Compatibility (HY) -1600 + (ID) 200
Total energy: 5550.0 ( 252.27 by residue)
QMean score : -0.051
(partial model without unconserved sides chains):
PDB file :
Tito_3G9R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G9R-query.scw
PDB file :
Tito_Scwrl_3G9R.pdb
: