Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEEFLNTHNASILLSAANKSHYPQDDLPEVALAGRSNVGKSSFINTLLGRKNLARTSSKPGKTQLLNFYNIDDKLRFVDVPGYGYAKVSKTERAKWGKMIEEYLVTRDNLRVVVSLVDFRHDPSADDIQIYEFLKYYEIPVIIVATKADKIPRGKWNKHESSIKKKLNFDKKDHFIVFSSVDRTGLDESWDTILSEL
1SVI Chain:A ((1-189))
-----MKVTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINR-------------QTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI
General information:
TITO was launched using:
RESULT:
Template:
1SVI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104674 for 1369 contacts (-76.5/contact) +
2D Compatibility (PS) -18867 + (NN) -3213 + (LL) 960
1D Compatibility (HY) -21200 + (ID) 5250
Total energy: -152244.0 ( -111.21 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_1SVI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SVI-query.scw
PDB file :
Tito_Scwrl_1SVI.pdb
: