Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIVVPVMPRSLEEAQEIDLSKFDSVDIIEWRADALPKDDIINVAPAIFEKFAGHEIIFTLRTTREGGNIVLSDAEYVELIQKINSIYNPDYIDFEYFSHKEVFQEMLEFPNLVLSYHNFQETPENIMEIFSELTALAPRVVKIAVMPKNEQDVLDVMNYTRGFKTINPDQVYATVSMSKIGRISRFAGDVTGSSWTFAYLDSSIAPGQITISEMKRVKALLDAD
2OCZ Chain:A ((5-226))
-RIVAPVMPRHFDEAQAIDISKYEDVNLIEWRADFLPKDEIVAVAPAIFEKFAGKEIIFTLRTVQEGGNITLSSQEYVDIIKEINAIYNPDYIDFEYFTHKSVFQEMLDFPNLILSYHNFEETPENLMEAFSEMTKLAPRVVKIAVMPQSEQDVLDLMNYTRGFKTLNPEQEFATISMGKLGRLSRFAGDVIGSSWTYVSL------GQVTLNDMKRIIEVLE--
General information:
TITO was launched using:
RESULT:
Template:
2OCZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139300 for 1761 contacts (-79.1/contact) +
2D Compatibility (PS) -23378 + (NN) -8511 + (LL) 352
1D Compatibility (HY) -30000 + (ID) 7800
Total energy: -208637.0 ( -118.48 by residue)
QMean score : 0.640
(partial model without unconserved sides chains):
PDB file :
Tito_2OCZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OCZ-query.scw
PDB file :
Tito_Scwrl_2OCZ.pdb
: