Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDYINRILHFIKEHMTYHVNFIDDFLDIKWEKVSNIHLRFWTTIIAYLVIFILSISTVILNLVLLFQGFLTQNPIIYLLFFITLVCAFYFAYKFITYTPTIVKNALQYIKKLKNV
3RPP Chain:A ((65-106))
---YMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRELWMRVWSRNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACR
General information:
TITO was launched using:
RESULT:
Template:
3RPP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13782 for 175 contacts (-78.8/contact) +
2D Compatibility (PS) -4336 + (NN) -1337 + (LL) 196
1D Compatibility (HY) -5200 + (ID) 650
Total energy: -25109.0 ( -143.48 by residue)
QMean score : 0.088
(partial model without unconserved sides chains):
PDB file :
Tito_3RPP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RPP-query.scw
PDB file :
Tito_Scwrl_3RPP.pdb
: