Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIIGLTGGIASGKSTVTKIIRESGFKVIDADQVVHKLQAKGGKLYQALLEWLGPEILDADGELDRPKLSQMIFANPDNMKTSARLQNSIIRQELACQ-RDQLKQTEEIFFVDIPLLIEEKYIKW-FDEIWLVFVDKEKQLQRLMARNNYSREEAELRLSHQMPLTDKKSFA-SLIINNNGDLITLKEQILDALQRL
4I1U Chain:A ((12-199))
----IGLTGGIGSGKTTVADLFAARGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDARRRLEAITHPLIRAETEREARD--AQGPYVIFV-VPLLVESRNWKARCDRVLVVDCPVDTQIARVMQRNGFTREQVEAIIARQATREARLAAADDVIVNDAATPDALAVQV-DALHQR
General information:
TITO was launched using:
RESULT:
Template:
4I1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72962 for 1384 contacts (-52.7/contact) +
2D Compatibility (PS) -20509 + (NN) -10569 + (LL) 924
1D Compatibility (HY) -12800 + (ID) 3100
Total energy: -119016.0 ( -85.99 by residue)
QMean score : 0.654
(partial model without unconserved sides chains):
PDB file :
Tito_4I1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4I1U-query.scw
PDB file :
Tito_Scwrl_4I1U.pdb
: