Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIISKHLSVSYDNNLVLEDINLRLEGSGIIGILGPNGAGKSTLMKALLGLVDSTGE---SGIGGDLLPLMGRVAYVEQKTNIDYQFPITVGECVSLGL----YKERGLFKRLSKTDWEKVSRVIDQVGLRGFENR-PINALSGGQFQRMLMARCLVQEADYIFLDEPFVGIDSISEQIIVNLLKKLSKAGKLILVVHHDLSKVDHYFDQVIILNRHLIACGPIDQAFTRENLSAAYGDAILLGQGD
4HLU Chain:D ((17-230))
------VSFRYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIFLDGSPADPFLLRKNVGYVFQNPSSQI-IGATVEEDVAFSLEIMGLDESEMRKRIKK--------VLELVGLSGLAAADPLN-LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVEREFDDVEIPFKWKLWKKC
General information:
TITO was launched using:
RESULT:
Template:
4HLU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -168323 for 1605 contacts (-104.9/contact) +
2D Compatibility (PS) -22490 + (NN) -9751 + (LL) 1524
1D Compatibility (HY) -17600 + (ID) 3750
Total energy: -220390.0 ( -137.31 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_4HLU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HLU-query.scw
PDB file :
Tito_Scwrl_4HLU.pdb
: