Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEKDLLQLVVKAADEKRAEDIVILDLQPVTSVADYFVIMSASNSRQLEAIADNIREQVKGNGGDASHLEGDSKAGWVLLDLNSVVVHIFSEDERQHYNLEKLWHEAPLLDAEDFMTE
3UPS Chain:A ((19-117))
-----LLKLVTDSLDDDQALEIATIPLAGKSSIADY-VIASGRSSRQVTA-AQKLADRIKAATGYVSKIEGLPAADWVLLDAGDIIIHLFRPEVRSFYNLERMWGFGD----------
General information:
TITO was launched using:
RESULT:
Template:
3UPS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1864 for 694 contacts (-2.7/contact) +
2D Compatibility (PS) -10557 + (NN) -6344 + (LL) 1376
1D Compatibility (HY) -800 + (ID) 800
Total energy: -18989.0 ( -27.36 by residue)
QMean score : 0.385
(partial model without unconserved sides chains):
PDB file :
Tito_3UPS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UPS-query.scw
PDB file :
Tito_Scwrl_3UPS.pdb
: