Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYKDYTGLDRTELLSKVRHMMSDKRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKELSDDEFLRLIDKYQLDPDLKKWGNNIWHGLVGIYKIQEDLAIKDQDILAAIAKHTVGSAQMSTLDKIVYVADYIEHNRDFPGVEEARELAKVDLNKAVAYETARTVSFLASKAQPIYPKTIETYNAYIPYLD
2O08 Chain:A ((1-181))
-------GMNRGKALQLVKPHLTEHRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKFRDKNEMRTLIREKLSQQDILFYGDELLHAPCGAYYVREEVGIEDEDVLQAIRFHTTGRPNMSLLEKIIFLADYIEPNRQFPGVEKVRTQAKTDLNGAIISSLVNTITFLLKKNQPIYPDTLATYNQLLLEQ-
General information:
TITO was launched using:
RESULT:
Template:
2O08.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85649 for 1467 contacts (-58.4/contact) +
2D Compatibility (PS) -19546 + (NN) -9776 + (LL) 628
1D Compatibility (HY) -13600 + (ID) 4000
Total energy: -131943.0 ( -89.94 by residue)
QMean score : 0.643
(partial model without unconserved sides chains):
PDB file :
Tito_2O08.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2O08-query.scw
PDB file :
Tito_Scwrl_2O08.pdb
: