Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKIFDTHTHLN---VENFEGKIDEEINLASELGVTKMNVVGFDQDTISKSLELSSQYAQVYSTIGWHP-TEAGSYDDNIESMIISHLENPKVIALGEIGLDYYWMEDPKDIQIEVFKRQIELSKEYNLPFVVHTRDALEDTYEVIKESGVGPFGGIMHSFSGSLEMAQKFIDLGMMISFSGVVTFKKALDVQEAARELPLDKILVETDAPYLAPVPKRGRENKTAYTRYVVEKIAELRGITVEEVAEATYQNAVRIFRLDEKN
1YIX Chain:A ((3-257))
---LVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTLPSYLHMRDLVGERDNVVFSCGVHPLNQNDPYD--VEDLRRLAAEE-GVVALGETGLDYYYTPETKVRQQESFIHHIQIGRELNKPVIVHTRDARADTLAILREEKVTDCGGVLHCFTEDRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKGVAVEELAQVTTDNFARLFHIDASR
General information:
TITO was launched using:
RESULT:
Template:
1YIX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125353 for 2228 contacts (-56.3/contact) +
2D Compatibility (PS) -27270 + (NN) -11233 + (LL) 180
1D Compatibility (HY) -18800 + (ID) 5150
Total energy: -187626.0 ( -84.21 by residue)
QMean score : 0.658
(partial model without unconserved sides chains):
PDB file :
Tito_1YIX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YIX-query.scw
PDB file :
Tito_Scwrl_1YIX.pdb
: