Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKVLTACGNGMGSSM----VIKMKVENA-LRQLGVSNFESASCSVGEAKGLAANYDIVVASNHLIHELDGRTKGHLVGLDNLMDDNEIKTKLQEIL
1VKR Chain:A ((379-414))
--KIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTN-----------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9428 for 142 contacts (-66.4/contact) +
2D Compatibility (PS) -3479 + (NN) -2493 + (LL) 4160
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -15190.0 ( -106.97 by residue)
QMean score : 0.235
(partial model without unconserved sides chains):
PDB file :
Tito_1VKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VKR-query.scw
PDB file :
Tito_Scwrl_1VKR.pdb
: