Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIFKRKKQVEMPLEKIPAHIGIIMDGNGRWAKKRLKPRVMGHKAGMDALQEVTIAASGLGVKVLTVYAFSTENWSRPDDEVKFIMNLPVEFFDKYVPELDKNNVRVQVIGDTHKLPKATYDAMQRACLRTKHNSGLVLNFALNYGGRSEITNAIKEIAQDVLEAKLNPDDITEDLVANHLMTNSLPYLYRDPDLIIRTSGELRLSNFLPWQSAYSEFYFTPVLWPDFKKDELHKAIVDYNQRHRRFGSV
4Q9O Chain:A ((6-240))
--------EVEVPTQ-VPAHIGIIMDGNGRWAKKRMQPRVFGHKAGMEALQTVTKAANKLGVKVITVYAFSTENWTRPDQEVKFIMNLPVEFYDNYVPELHANNVKIQMIGETDRLPKQTFEALTKAEELTKNNTGLILNFALNYGGRAEITQALKLISQDVLDAKINPGDITEELIGNYLFTQHLPKDLRDPDLIIRTSGELRLSNFLPWQGAYSELYFTDTLWPDFDEAALQEAILAYNRRH------
General information:
TITO was launched using:
RESULT:
Template:
4Q9O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103388 for 1869 contacts (-55.3/contact) +
2D Compatibility (PS) -25465 + (NN) -11961 + (LL) 1356
1D Compatibility (HY) -28400 + (ID) 8300
Total energy: -176158.0 ( -94.25 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_4Q9O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q9O-query.scw
PDB file :
Tito_Scwrl_4Q9O.pdb
: