Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKFGFLSVLEEELDKHLQYDFAMDWDKKNHTVEVTFILEAQNSSAIETVDDQGETSSEDIVFEDYVLFYNPVKSRFDAEDYLVTIPYEPKKGLSREFLAYFAE------TLNEVATEGLSD---------LMDFLTDDSIEEFGLSWDTDAFENGRAELKETEFYPYPRY
3MFK Chain:A ((23-83))
--------------------------------------------------------------------------------------------GTFKDYVRDRADLNKDKPVIPAAALAGYTGSGPIQLWQFLLELLTDKSCQSF-ISWTGDGWEFKLSDPDEVARRWGKRK
General information:
TITO was launched using:
RESULT:
Template:
3MFK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4852 for 194 contacts (-25.0/contact) +
2D Compatibility (PS) -4939 + (NN) -3567 + (LL) 6556
1D Compatibility (HY) -3600 + (ID) 700
Total energy: -11102.0 ( -57.23 by residue)
QMean score : 0.152
(partial model without unconserved sides chains):
PDB file :
Tito_3MFK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MFK-query.scw
PDB file :
Tito_Scwrl_3MFK.pdb
: