Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPSEKEILDALSKVYSEEVIQADDYFRQAI------------FELASQLEKEGMNSLLATKIDSLINQYVLTHQFDAPKSIFDLSRLVKTKASHYKGTAISAIMLGSFLSGGPK
3VVJ Chain:A ((94-184))
-PSDNYSLSLASKLYAEETYPVLPEYLQCIKELYKGSLETVSFQTAADQARELINSWVETQTNGVIKNFL------QPGSVDPQTEMVLVDAIYFKGTWEKAFKDEDTQEVPFR
General information:
TITO was launched using:
RESULT:
Template:
3VVJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5663 for 445 contacts (-12.7/contact) +
2D Compatibility (PS) -8094 + (NN) -292 + (LL) 656
1D Compatibility (HY) -3600 + (ID) 1200
Total energy: -18193.0 ( -40.88 by residue)
QMean score : 0.017
(partial model without unconserved sides chains):
PDB file :
Tito_3VVJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VVJ-query.scw
PDB file :
Tito_Scwrl_3VVJ.pdb
: