Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGIEFKNVSYTYQAGTPFEGRALFDVNLKIEDASYTAFIGHTGSGKSTIMQLLNGLHIPTKGEVIVDDFSIKAGDKNKEIKFIRQKVGLVFQFPESQLFEETVLKDVAFGPQNFGISQIEAERLAEEKLRLVGISEDLFDKNPFELSGGQMRRVAIAGILAMEPKVLVLDEPTAGLDPKGRKELMTLFKNLHK-KGMTIVLVTHLMDDVADYADYVYVLEAGKVTLSGQPKQIFQEVELLESKQLGVPKITKFAQRLSHKGLNLPSLPITINEFVEAIKHG
4HZU Chain:B ((2-276))
-AIAFEHVTYTYQAGTPMAHTALTDVSLTVPDRGYLAIIGHTGSGKSTLIQQLNALLKPTSGTIKIDEFTITPETTNAALKPLRQHVGMVFQFPENQLFEETVRQDIAFGPKNFGMADADALALADEMLTTVGLDQSYAERSPFELSGGQMRRVAIAGVLAMQPKVLVLDEPTAGLDPQGRQEMMRLFARLHQEQGLTIVLVTHQMEDVAQYAEQVAVMHEGRLMKFGTPADVFSNREWLQDHQLDVPQAAQFARRLRDRGLTFPKQPLTADQLADYLAQQ
General information:
TITO was launched using:
RESULT:
Template:
4HZU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147525 for 2262 contacts (-65.2/contact) +
2D Compatibility (PS) -30105 + (NN) -17850 + (LL) 208
1D Compatibility (HY) -25600 + (ID) 7500
Total energy: -228372.0 ( -100.96 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_4HZU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HZU-query.scw
PDB file :
Tito_Scwrl_4HZU.pdb
: