Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDVVLDFAKALVNAKRNLTYCSVCGHITDQDPCYICEDTRRDKSVICVVQDPKDVIAMEKMKEYNGQYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLLKPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL
3VDU Chain:A ((17-212))--YSTSVAKLIEELSKLPGIGPGTAQRLAFFIINMPLDEVRSLSQAIIEAKEKLRYCKICFNITDKEVCDICSDENRDHSTICVVSHPMDVVAMEKVKEYKGVYHVLHGVISPIEGVGPEDIRIKELLERVRDGSVKEVILATNPDIEGEATAMYIAKLLKPFGVKVTRIAHGIPVGGDLEYTDVVTLSKALEGRREV


General information:
TITO was launched using:
RESULT:

Template: 3VDU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123540 for 1271 contacts (-97.2/contact) +
2D Compatibility (PS) -21336 + (NN) -13140 + (LL) 328
1D Compatibility (HY) -24400 + (ID) 6200
Total energy: -188288.0 ( -148.14 by residue)
QMean score : 0.491

(partial model without unconserved sides chains):
PDB file : Tito_3VDU.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3VDU-query.scw
PDB file : Tito_Scwrl_3VDU.pdb: