Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDVVLDFAKALVNAKRNLTYCSVCGHITDQDPCYICEDTRRDKSVICVVQDPKDVIAMEKMKEYNGQYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLLKPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL
3VDU Chain:A ((17-212))
--YSTSVAKLIEELSKLPGIGPGTAQRLAFFIINMPLDEVRSLSQAIIEAKEKLRYCKICFNITDKEVCDICSDENRDHSTICVVSHPMDVVAMEKVKEYKGVYHVLHGVISPIEGVGPEDIRIKELLERVRDGSVKEVILATNPDIEGEATAMYIAKLLKPFGVKVTRIAHGIPVGGDLEYTDVVTLSKALEGRREV
General information:
TITO was launched using:
RESULT:
Template:
3VDU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123540 for 1271 contacts (-97.2/contact) +
2D Compatibility (PS) -21336 + (NN) -13140 + (LL) 328
1D Compatibility (HY) -24400 + (ID) 6200
Total energy: -188288.0 ( -148.14 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_3VDU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VDU-query.scw
PDB file :
Tito_Scwrl_3VDU.pdb
: