Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDETVKLNHTCVICDQEKNRGIHLYTKFICLDCERKVISTSTSDPDYAFYVKKLKSIHTPPLYS
4K6F Chain:A ((167-193))
--------------------GMHGFTKSLALEIARKGVTVNTVSPGY-----------------
General information:
TITO was launched using:
RESULT:
Template:
4K6F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3794 for 107 contacts (-35.5/contact) +
2D Compatibility (PS) -2794 + (NN) -663 + (LL) 2636
1D Compatibility (HY) -1200 + (ID) 500
Total energy: -6315.0 ( -59.02 by residue)
QMean score : 0.064
(partial model without unconserved sides chains):
PDB file :
Tito_4K6F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K6F-query.scw
PDB file :
Tito_Scwrl_4K6F.pdb
: