Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEGAEQIISEIQNQLQNLK
1YFB Chain:A ((2-53))
-FMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPN-------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1YFB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12790 for 212 contacts (-60.3/contact) +
2D Compatibility (PS) -5570 + (NN) -805 + (LL) 3216
1D Compatibility (HY) -8400 + (ID) 2600
Total energy: -26949.0 ( -127.12 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_1YFB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YFB-query.scw
PDB file :
Tito_Scwrl_1YFB.pdb
: