Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLFDTHAHLNAEQYDT---DLEEVIERAKAEKVERIVVVGFDRPTITRAMEMIEEYDFIYAAIGWHPVDAIDMTEEDLAWIKELSAHEKVVAIGEMGLDYHWDKSPKDIQKEVFRNQIALAKEVNLPIIIHNRDATEDVVTILKEEGAEAVGGIMHCFTGSAEVARECMKMNFYLSFGGPVTFKNAKKPKEVVKEIPNDRLLIETDCPFLTPHPFRGKRNEPSYVKYVAEQIAELKEMTFEEIASITTENAKRLFRIN
1YIX Chain:A ((2-257))
FLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTLPSYLHMRDLVGERDNVVFSCGVHPLNQND--PYDVEDLRRLAAEEGVVALGETGLDYYYTPETKVRQQESFIHHIQIGRELNKPVIVHTRDARADTLAILREEKVTDCGGVLHCFTEDRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKGVAVEELAQVTTDNFARLFHID
General information:
TITO was launched using:
RESULT:
Template:
1YIX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162840 for 2258 contacts (-72.1/contact) +
2D Compatibility (PS) -27248 + (NN) -14208 + (LL) 260
1D Compatibility (HY) -21200 + (ID) 5100
Total energy: -230336.0 ( -102.01 by residue)
QMean score : 0.608
(partial model without unconserved sides chains):
PDB file :
Tito_1YIX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YIX-query.scw
PDB file :
Tito_Scwrl_1YIX.pdb
: