Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDYLVKALAYDGKVRAYAARTTDMVNEGQRRHGTWPTASAALGRTMTASLMLGAMLKGDDKLTVKIEGGGPIGAIVADANAKGEVRAYVSNPQVHFDLNEQGKLDVRRAVGTNGTLSVVKDLGLREFFTGQVEIVSGELGDDFTYYLVSSEQVPSSVGVGVLVNPDNTILAAGGFIIQLMPGT-DDETITKIEQRLSQVEPISKLIQKGLTPEEILEEVLGEKPEILETMPVRFHCPCSKERFETAILGLGKKEIQDMIEEDGQAEAVCHFCNEKYLFTKEELEGLRDQTTR |
1VQ0 Chain:A ((20-285)) | ---------FDHKVRFSIVRMREVVEEARNRHALSYLATVVLGRALIGAALVTPWLAEKERWTLDIEGNGPIRRVVAQSTSEFTVRGYVANPKVELPLNEKGKFDVAGAIG-QGVLRVVRDLGLKTPFVSQVPLVSGEIAEDLAYYFAVSEQIPSAFSIGVLVDSDGVKI-AGGFAVQIIDRTLEQEKVEMIEKNIKNLPSISKLFQEA-EPLDVLERIFGEKVGFVETAEIKYKCDCNREKAKNALLVLDKKELEDMRKE-GKGEVVCKWCNTRYVFS------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1VQ0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -142856 for 2143 contacts (-66.7/contact) +
2D Compatibility (PS) -28493 + (NN) -5279 + (LL) 2320
1D Compatibility (HY) -27600 + (ID) 5450
Total energy: -207358.0 ( -96.76 by residue)
QMean score : 0.568
|
|
|