Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPTINQLIRKGRVSKVENSKSPALNKGYNSFKKEHTNVSSPQKRGVCTRVGTMTPKKPNSALRKYARVRLTNGIEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGVENRAQGRSKYGTKKPKAK
3DEG Chain:D ((2-123))
--TVNQLVRKPRARKVAKSNVPALE-------------ACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGALDCSGVKDRKQARSKYGVKRPKA-
General information:
TITO was launched using:
RESULT:
Template:
3DEG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26887 for 793 contacts (-33.9/contact) +
2D Compatibility (PS) -13258 + (NN) -8457 + (LL) 580
1D Compatibility (HY) -10000 + (ID) 4600
Total energy: -62622.0 ( -78.97 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_3DEG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DEG-query.scw
PDB file :
Tito_Scwrl_3DEG.pdb
: