Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLKCTISYDGHLFNGYQVQPGKRTVQDELEKALAVLHKSKDRIPVVSSGRTDSGVHAAGQVIHFDTPLSIPAERWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTEK-HPDVFKRHYAYHFSYRLNVQDMREAAKHLIGTHDFTSFCAAKTEVQDKVRTIYELDWTETADGLQMRITGSGFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAGRTAPGHGLYLWNVYYDN
1DJ0 Chain:A ((5-248))
-KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQV--ANEPITVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYPD
General information:
TITO was launched using:
RESULT:
Template:
1DJ0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157867 for 2007 contacts (-78.7/contact) +
2D Compatibility (PS) -26236 + (NN) -12630 + (LL) 408
1D Compatibility (HY) -18800 + (ID) 4600
Total energy: -219725.0 ( -109.48 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_1DJ0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DJ0-query.scw
PDB file :
Tito_Scwrl_1DJ0.pdb
: