Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEMMIKKRIKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTID--RIRKKKPDYYLDAEVAGTEGLTMYSQIVADGVLPEDAVVS-LELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQLRDL
4CXF Chain:A ((13-181))
----------QAASGNQRAFGQLVARHGVALAQAARSFGIPETDVDDVVQDTFVAAWHALDDFDPDRPFRAWLFRIGLNKMRDLYRFRR----------------------------------AARLELAR-VASTLGKLDTGSREVIVLTAIVGMSQPEAAAVLGLSVKAVEGRIGRARAKL-------
General information:
TITO was launched using:
RESULT:
Template:
4CXF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83988 for 972 contacts (-86.4/contact) +
2D Compatibility (PS) -14003 + (NN) -978 + (LL) 4236
1D Compatibility (HY) -6000 + (ID) 2250
Total energy: -102983.0 ( -105.95 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_4CXF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CXF-query.scw
PDB file :
Tito_Scwrl_4CXF.pdb
: