Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDEQMLTEWPSHLPWLNQSQN---DFTFPSDTYLLLYFWSMSCPNCHQLTDKVL---QDIKDMNVKVIGVHVPYIEEEKSMEVVLTYALDRGLAIPIVLDQNYEIVTTCHVQGIPSFCLLSQYGQIITKTMGDVGWDKMLKKIAGL
5CYY Chain:A ((409-520))
---------------WLNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNYRNRYWPAEYLIDATGTV--------------------
General information:
TITO was launched using:
RESULT:
Template:
5CYY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100762 for 728 contacts (-138.4/contact) +
2D Compatibility (PS) -11334 + (NN) -5383 + (LL) 2388
1D Compatibility (HY) -6800 + (ID) 1850
Total energy: -123741.0 ( -169.97 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_5CYY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5CYY-query.scw
PDB file :
Tito_Scwrl_5CYY.pdb
: