Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKNNLPIIALDFASAEETLAFLAPFQQEPLFVKVGMELFYQEGPSIVKQLKERNCELFLDLKLHDIPTTVNKAMKRLASLGVDLVNVHAAGGKKMMQAALEGLEEGTPAGKKRPSLIAVTQLTSTSEQIMKDELLIEKSLIDTVVHYSKQAEESGLDGVVCSVHEAKAIYQAVSPSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITKAEDPVKAYKAVRLEWEGIKS
2YYT Chain:A ((8-236))------IVALDFPSKQEVERFLRPFAGTPLFVKVGMELYYQEGPAIVAFLKEQGHAVFLDLKLHDIPNTVKQAMKGLARVGADLVNVHAAGGRRMMEAAIEGLDAGTPSGRMRPRCIAVTQLTSTDERMLHEELWISRPLVETVAHYAALAKESGLDGVVCSANEAAFIKERCGASFLAVT----------------VTPRKARALGSDYIVIGRSLTRAADPLRTYARLQHEWN----


General information:
TITO was launched using:
RESULT:

Template: 2YYT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1067 -143153 -134.16 -672.08
target 2D structure prediction score : 0.71
Monomeric hydrophicity matching model chain A : 0.85

3D Compatibility (PKB) : -134.16
2D Compatibility (Sec. Struct. Predict.) : 0.71
1D Compatibility (Hydrophobicity) : 0.85
QMean score : 0.698

(partial model without unconserved sides chains):
PDB file : Tito_2YYT.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2YYT-query.scw
PDB file : Tito_Scwrl_2YYT.pdb: