Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMMQEETFYSVRMRASMNGSHEDGGKHISGGERLIPFHEMKHTVNALLEKGLSHSRGKPDFMQIQFEEVHESIKTIQPLPVHTNEVSCPEEGQKLARLLLEK------EGVSRDVIEKAYEQIPEWSDVRGAVLFDIHTGKRMDQTKEKGVRVSRMDWPDANFEKWALHSHVPAH---SRIKEALALASKVSRHPAVVAELCWSDDPDYITGYVAGKKMGYQRITAMKEYGTEEGCRVFFIDGSNDVNTYIHDLEKQPILIEWEEDHDS
3GDE Chain:A ((149-251))------------------------------------------------------------------------------------LATPLEARYLTRLILNEMRLGVGEGIMRDAIARAFRADPE--TVERAYMITNDLGRVAVVAKKEG---------EEGLRKMKIEIHIPVRMMLAQVAESLESAVREMRTAAV------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 3GDE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 213 19215 90.21 208.86
target 2D structure prediction score : 0.45
Monomeric hydrophicity matching model chain A : 0.62

3D Compatibility (PKB) : 90.21
2D Compatibility (Sec. Struct. Predict.) : 0.45
1D Compatibility (Hydrophobicity) : 0.62
QMean score : 0.223

(partial model without unconserved sides chains):
PDB file : Tito_3GDE.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3GDE-query.scw
PDB file : Tito_Scwrl_3GDE.pdb: