Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKTASKFSVMFFMLLALCGCWDVKDIEQLSFARGLAIDETNDHQYKLTYQNLLPQSEDSQASGKPEFVNVTSHGKTILEAVSDVSIKDPPVYSDHLKVILLGEKLMRNQNVDQVLNHFIRDDELRRSSYLMAARGNAADVFTKGNPNQQQPMPSEKLIDLTTHSGYNGKIMIPLRIGRA-----SVYSQNGYSYLIQAVKNEKGKAKYDGAGIIKRGSNKLVG--FLSADETQTLSWVMGTIQGGVMPTTDKGH------PITFEIKKSKTKIKPVIENGKPVFHISVKTKGILTEDQNPNENSFSKSYLHRLENIFEKKLERDVKQVMDKLQHEYKTDPVFLSDHIRIQHPDYWNKVKGHWDEIFSETDFKYDISFKIINFGTVGK
1UYP Chain:A ((195-297))-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------VRIGEKDILIYSITSTNSVLFSMGELK--EGKLNVEKRGLLDHGTDFYAAQTFFGTDRVVVIGWLQSWLRTGLYPTKREGWNGVMSLPRELYVENNELKVKPVDE-------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 1UYP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 314 22595 71.96 251.06
target 2D structure prediction score : 0.52
Monomeric hydrophicity matching model chain A : 0.60

3D Compatibility (PKB) : 71.96
2D Compatibility (Sec. Struct. Predict.) : 0.52
1D Compatibility (Hydrophobicity) : 0.60
QMean score : 0.096

(partial model without unconserved sides chains):
PDB file : Tito_1UYP.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1UYP-query.scw
PDB file : Tito_Scwrl_1UYP.pdb: