Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTGSVDRPDQNRGERSMKSPGLDLVRRTLDEARAAARARGQDAGRGRVASVASGRVAGRRRSWSGPGPDIRDPQPLGKAARELAKKRGWSVRVAEGMVLGQWSAVVGHQIAEHARPTALNDGVLSVIAESTAWATQLRIMQAQLLAKIAAAVGNDVVRSLKITGPAAPSWRKGPRHIAGRGPRDTYG |
3VPS Chain:A ((243-264)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------NDVIRILQATSPAAEVARKQPR------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VPS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 801 for 70 contacts (11.4/contact) +
2D Compatibility (PS) -2275 + (NN) -1082 + (LL) 9784
1D Compatibility (HY) -400 + (ID) 650
Total energy: 6178.0 ( 88.26 by residue)
QMean score : 0.332
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