Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLARHFGAGRKAHSRAVATLKADIQAWHPAGIQTPKPRCESDVFARI----------GHTSHPSTRKSRVGPGASEAPLA
4LDM Chain:A ((87-147))
------------------VLMKQIPIWLPLGVADQKTYSFDSTTAAIMLASYTITHFGKATNPLVRVNRLGPGIPDHPL-
General information:
TITO was launched using:
RESULT:
Template:
4LDM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3577 for 199 contacts (18.0/contact) +
2D Compatibility (PS) -5282 + (NN) -1981 + (LL) 1652
1D Compatibility (HY) -1600 + (ID) 850
Total energy: -4484.0 ( -22.53 by residue)
QMean score : 0.624
(partial model without unconserved sides chains):
PDB file :
Tito_4LDM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LDM-query.scw
PDB file :
Tito_Scwrl_4LDM.pdb
: