Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIYVVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH
1CQM Chain:A ((1-95))
MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELRIRDNVRRVMVVKSQE-
General information:
TITO was launched using:
RESULT:
Template:
1CQM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60685 for 649 contacts (-93.5/contact) +
2D Compatibility (PS) -10036 + (NN) -1146 + (LL) 44
1D Compatibility (HY) -10000 + (ID) 1700
Total energy: -83523.0 ( -128.69 by residue)
QMean score : 0.615
(partial model without unconserved sides chains):
PDB file :
Tito_1CQM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CQM-query.scw
PDB file :
Tito_Scwrl_1CQM.pdb
: