Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPTDRRVRADAARNRARVLEVAYQTFAADGLSVPVDEIARRAGVGAGTVYRHFPTKEALFQAVIADRMHRIIDKGHALLKSKHPGDALFAFLRSMVLQWGATDRGLVEALAGVGIEISSAAPEAEADFLDLLT----DLLRAAQRAGTVRPDVDVLEVKTLLVGCQAMQSYN---AELAAKVTDVALDGLRANRK
2REK Chain:A ((12-192))
---------ADARRNYDRIIEAAAAEVARHGADASLEEIARRAGVGSATLHRHFPSRWGLLQAVFQERVAQLCDEARSLAAEHPPATALTRWLTSLAV-FGAVTRGAARSL---------AALDSRCE--QLLTEAGADLLARAQEDGTVRDDVTALELLSLANAVSLAAEHTPDAAHHATRLMGIALGGLGA---
General information:
TITO was launched using:
RESULT:
Template:
2REK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90774 for 1211 contacts (-75.0/contact) +
2D Compatibility (PS) -18363 + (NN) -16306 + (LL) 1640
1D Compatibility (HY) -8400 + (ID) 3350
Total energy: -135553.0 ( -111.93 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_2REK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2REK-query.scw
PDB file :
Tito_Scwrl_2REK.pdb
: