Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSSITVSVDPVDPVDPVDPVDPVDAVVAAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTVADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKACFDRID-----HADLMDRVRHRIKDKRVLRLVN----WQRIRHRWNWTDVRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGNTIPTPWTQAV |
2GGQ Chain:A ((161-224)) | ------------------------------------------------------------------------------------------------------------------------------------------YKLNSDIFTYLDKISISERGELELTDAINLMAKDHRV-KVIEYEGYWMDIGKPWNIIDVNKWALD----------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2GGQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -8978 for 259 contacts (-34.7/contact) +
2D Compatibility (PS) -5667 + (NN) 842 + (LL) 10680
1D Compatibility (HY) -5200 + (ID) 950
Total energy: -9273.0 ( -35.80 by residue)
QMean score : 0.154
|
|
|