Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIKRRTQEERSAATREALITGARKLWGLRGYAEVGTPEIATEAGVTRGAMYHQFADKAALFRDVVEVVEQDVMARMATLVAASGAATPADAIRAAVDAWLEVSGDPEVRQL---ILLDAPVVLGWAGFRDVAQRY----SLGMTEQLITEAIRAGQLARQPVRPLAQVL----IGALDEAAMFIATADDPKRARRETRQVLRRLIDGMLNG
2QOP Chain:A ((6-198))
-------KQE-AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNI-GELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKEARDYVAIL----------
General information:
TITO was launched using:
RESULT:
Template:
2QOP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47657 for 1194 contacts (-39.9/contact) +
2D Compatibility (PS) -19962 + (NN) -10071 + (LL) 1604
1D Compatibility (HY) -11200 + (ID) 2600
Total energy: -89886.0 ( -75.28 by residue)
QMean score : 0.341
(partial model without unconserved sides chains):
PDB file :
Tito_2QOP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QOP-query.scw
PDB file :
Tito_Scwrl_2QOP.pdb
: