Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVTVGVICAIPQELAYLRGVLVDAKRQQVAQILFDSGQLDAHRVVLAAAGMGKVNTGLTATLLADRFGCRTIVFTGVAGGLDPELCIGDIVIADRVVQHDFGLLTDERLRPYQPGHIPFIEPTERLGYPVDPAVIDRVKHRLDGFTLAPLSTAAGGGGRQPRIYYGTILTGDQYLHCERTRNRLHHEL-GGMAVEMEGGAVAQICASFDIPWLVIRALSDLAGADSGVDFNRFVGEVAASSARVLLRLLPVLTAC
4GMH Chain:A ((4-230))
----IGIIGAMEEEVTILKNKLTQLSEISVAHVKFYTGILKDREVVITQSGIGKVNAAISTTLLINKFKPDVIINTGSAGALDESLNVGDVLISDDVKYHD----ADATAFGYEYGQIPQMP----VAFQSSKPLIEKVSQVVQQQQLTA--------------KVGLIVSGDSFIGSVEQRQKIKKAFPNAMAVEMEATAIAQTCYQFNVPFVVVRAVSDLANGEAEMSFEAFLEKAAVSSSQTVEALVSQL---
General information:
TITO was launched using:
RESULT:
Template:
4GMH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -196272 for 1844 contacts (-106.4/contact) +
2D Compatibility (PS) -24099 + (NN) -7050 + (LL) 1460
1D Compatibility (HY) -19200 + (ID) 3800
Total energy: -248961.0 ( -135.01 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_4GMH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GMH-query.scw
PDB file :
Tito_Scwrl_4GMH.pdb
: