Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRVVRYLSVVVAITLMLTAESVSIATAAVPPLQPIPGVASVSPANGAVVGVAHPVVVTFTTPVTDRRAVERSIRISTPHNTTGHFEWVASNVVRWVPHRYWPPHTRVSVGVQELTEGFETGDALIGVASISAHTFTVSRNGEVLRTMPASLGKPSRPTPIGSFHAMSKERTVVMDSRTIGIPLNSSDGYLLTAHYAVRVTWSGVYVHSAPWSVNSQGYANVSHGCINLSPDNAAWYFDAVTVGDPIEVVG
4JMX Chain:A ((4-219))
----------------------------------PIPGVASVSPANGAVVGVAHPVVVTFTTPVTDRRAVERSIRISTPHNTTGHFEWVASNVVRWVPHRYWPPHTRVSVGVQELTEGFETGDALIGVASISAHTFTVSRNGEVLRTMPASLGKPSRPTPIGSFHAMSKERTVVMDSRTIGIPLNSSDGYLLTAHYAVRVTWSGVYVHSAPWSVNSQGYANVSHGCINLSPDNAAWYFDAVTVGDPIEVV-
General information:
TITO was launched using:
RESULT:
Template:
4JMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131544 for 1681 contacts (-78.3/contact) +
2D Compatibility (PS) -23494 + (NN) -13057 + (LL) 3828
1D Compatibility (HY) -28800 + (ID) 10800
Total energy: -203867.0 ( -121.28 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_4JMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JMX-query.scw
PDB file :
Tito_Scwrl_4JMX.pdb
: