Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSNQKAILAGGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRNHGTHAEAVEIIFDPTVTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIADVEASGLWPGKVVTEVSPAGDFWEAEPEHQDYLQRYPNGYTCHFVRPGWRLPRRTAESALRASLSPELGT
4GWB Chain:A ((3-165))
----KRAVLAGGCFWGMQDLIRKLPGVIETRVGYTGGDVPNATYRNHGTHAEGIEIIFDPERISYRRILELFFQIHDPTTKDRQGNDIGTSYRSAIYYVDDEQKRIAQETIADVEASGLWPGKVVTEVEPVRDFWEAEPEHQNYLERYPNGYTCHFPRPNWVLPRRS---------------
General information:
TITO was launched using:
RESULT:
Template:
4GWB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74051 for 1293 contacts (-57.3/contact) +
2D Compatibility (PS) -18211 + (NN) -17538 + (LL) 1076
1D Compatibility (HY) -18000 + (ID) 6350
Total energy: -133074.0 ( -102.92 by residue)
QMean score : 0.832
(partial model without unconserved sides chains):
PDB file :
Tito_4GWB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GWB-query.scw
PDB file :
Tito_Scwrl_4GWB.pdb
: