Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPGVQDRVIVVTGAGGGLGREYALTLAGEGASVVVNDLGGARDGTGAGSAMADEVVAEIRDKGGRAVANYDSVATEDGAANIIKTALDEFGAVHGVVSNAGILRDGTFHKMSFENWDAVLKVHLYGGYHVLRAAWPHFREQSYGRVVVATSTSGLFGNFGQTNYGAAKLGLVGLINTLALEGAKYNIHANALAPIAATRMTQDILPPEVLEKLTPEFVAPVVAYLCTEECADNASVYVVGGGKVQRVALFGNDGA---NFDKPPSVQDVAARWAEITDLSGAKIAGFKL
1GZ6 Chain:A ((10-282))
------RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSV---EAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTETVMPEDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAGWIGKLRWERTLGAIVRKRNQPMTPEAVRDNWVKICDFSNA-------
General information:
TITO was launched using:
RESULT:
Template:
1GZ6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -165838 for 2259 contacts (-73.4/contact) +
2D Compatibility (PS) -29461 + (NN) -10698 + (LL) 1044
1D Compatibility (HY) -26000 + (ID) 7100
Total energy: -238053.0 ( -105.38 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_1GZ6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GZ6-query.scw
PDB file :
Tito_Scwrl_1GZ6.pdb
: