Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLLNDIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFR-LDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVARVAV
2JZA Chain:A ((4-107))
---------WTTVCKLDDILPGTGVCALVEQ-QQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDGFCLEDGAYSVAAYDTQVT-NGNVQIS----
General information:
TITO was launched using:
RESULT:
Template:
2JZA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67744 for 743 contacts (-91.2/contact) +
2D Compatibility (PS) -11119 + (NN) -5790 + (LL) 1288
1D Compatibility (HY) -11200 + (ID) 2350
Total energy: -96915.0 ( -130.44 by residue)
QMean score : 0.386
(partial model without unconserved sides chains):
PDB file :
Tito_2JZA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JZA-query.scw
PDB file :
Tito_Scwrl_2JZA.pdb
: