Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHTQVHTARLVHTADLDSETRQDIRQMVTGAFAGDFTETDWEHTLGGMHALIWHHGAIIAHAAVIQRRLIYRGNALRCGYVEGVAVRADWRGQRLVSALLDAVEQVMRGAYQLGALSSSARARRLYASRGWLPWHGPTSVLAPTGPVRTPDDDGTVFVLPIDISLDTSAELMCDWRAGDVW
1M4D Chain:A ((1-181))
MHTQVHTARLVHTADLDSETRQDIRQMVTGAFAGDFTETDWEHTLGGMHALIWHHGAIIAHAAVIQRRLIYRGNALRCGYVEGVAVRADWRGQRLVSALLDAVEQVMRGAYQLGALSSSARARRLYASRGWLPWHGPTSVLAPTGPVRTPDDDGTVFVLPIDISLDTSAELMCDWRAGDVW
General information:
TITO was launched using:
RESULT:
Template:
1M4D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136255 for 1386 contacts (-98.3/contact) +
2D Compatibility (PS) -19207 + (NN) -7850 + (LL) 0
1D Compatibility (HY) -24400 + (ID) 9050
Total energy: -196762.0 ( -141.96 by residue)
QMean score : 0.687
(partial model without unconserved sides chains):
PDB file :
Tito_1M4D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M4D-query.scw
PDB file :
Tito_Scwrl_1M4D.pdb
: