Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDATPNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLLSPQGVINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTG-NGVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPLGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRVLVSPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQSS
5DLB Chain:A ((22-301))
----PNAVELTVENAWFIAEMVGAGTFPWVLAITTPYSDEAQRSAFFARQRDELTQLGLLSSDGVVNPAVAEWIKVVCFPERWLDLRYVGP--------LLRGIVAQSAGIM-------FNTVVALRNAQLVTFTAMDIDDPRALVPVLGVGLSARPPARFEEFSMPMRVGARADERLRSGESLDEVLDYLGIPVSARPVVQAVFSGPRSYVEIVAGCNRDGEHTTTDVGLSIVDTTAGRVLVSPSRAFDGEWVSTFSAGTPFATAVAIDQLIANLPDGQWF--------------
General information:
TITO was launched using:
RESULT:
Template:
5DLB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -237738 for 2033 contacts (-116.9/contact) +
2D Compatibility (PS) -28661 + (NN) -15556 + (LL) 912
1D Compatibility (HY) -33600 + (ID) 10850
Total energy: -325493.0 ( -160.10 by residue)
QMean score : 0.580
(partial model without unconserved sides chains):
PDB file :
Tito_5DLB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5DLB-query.scw
PDB file :
Tito_Scwrl_5DLB.pdb
: