Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIG-RYARNAKRAVKSHGWGVPGLSWLPGEDPDPFGH
1IX1 Chain:A ((2-164))
-AILNILEFPDPRLRTIAKPVEVVDDA-----VRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPR----VFINPEFE----PLT-EDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQH--------------------
General information:
TITO was launched using:
RESULT:
Template:
1IX1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74554 for 1250 contacts (-59.6/contact) +
2D Compatibility (PS) -17493 + (NN) -3694 + (LL) 488
1D Compatibility (HY) -11600 + (ID) 3350
Total energy: -110203.0 ( -88.16 by residue)
QMean score : 0.429
(partial model without unconserved sides chains):
PDB file :
Tito_1IX1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IX1-query.scw
PDB file :
Tito_Scwrl_1IX1.pdb
: